This piece from the Daily Maverick‘s J. Brooks Spector is the most detailed and explanatory coverage on the Egyptian charges against the international and local NGO employees.  Do read the whole thing, but here is an excerpt:

In theory at least, the social and political explosion of the Arab Spring should have been NED and its associated bodies’ next golden moment in the sun. All those regimes, previously frozen in time, now suddenly with their societies breaking out into a new, more open style of politics and freer elections should be making bountiful times for groups like the NED. Instead, these organisations seem to be running into a growing wave of suspicion about their ulterior motives.

Traditionally, of course, authoritarian rulers have viewed these pro-democracy groups with deep suspicion, routinely denouncing them as meddlers or spies – and sometimes directly harassing their staffers. But Egypt’s move breaks new ground in announcing it wanted to try 19 Americans and several dozen others on charges that have left the Obama administration shocked and surprised – and put the major American military aid program to Egypt at risk as well.

In the wake of the announcement of the charges, the Egyptian government quickly recalled a senior military aid delegation that was just about to begin some intensive discussions with members of Congress. The charges, as they were publicly announced, included operating without licenses, “conducting research to send to the United States” and supporting Egyptian candidates and parties “to serve foreign interests”. The fresh winds of last year’s Arab Spring and the heady embrace of the ideas of Gene Sharpe and Saul Alinsky and the power of the Internet, satellite TV and social media appear to have shifted more than just a bit.

In response, the IRI and NDI have argued their activities consisted of teaching the methodologies of grass-roots organising, political campaigns and democratic elections to anyone willing to listen, just as they have been doing in other places for years – without favouring any particular Egyptian political faction. An allied group, the Freedom House NGO, said that for its part it had been training young activists and carrying out international exchange programs while another NGO, the International Centre for Journalists, was doing its training on media issues. All four bodies insisted that had been trying to comply with Egyptian laws and be transparent about their activities. As Freedom House executive director David Kramer told reporters, “Everything we did was out in the open.” Where’s the beef?

Oddly, perhaps, the NDI and IRI seem to have come into the sights of prosecutors because of their role in supporting opposition to President Hosni Mubarak, before he fell from power last year. Sinister stuff that. Former chief of intelligence under Hosni Mubarak, Omar Suleiman, explained in his court deposition, “Data was collected about the activities of the American Embassy through the National Democratic Institute and the International Republican Institute.” Moreover, back in March 2011, when US officials had announced grants of some $65-million to pro-democracy groups, Fayza Abul Naga, Egypt’s Minister of Planning and International Cooperation – and a holdover from Mubarak’s regime – had renewed her longstanding campaign against foreign financing. Some analysts speculate she is close to the country’s highest-ranking military figure, Field Marshal Mohamed Hussein Tantawi, and their relationship is tied up with the crackdown.